SE2550121

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1351
  • Brachypodium distachyon
  • SE2550121
  • PIF/harbinger
  • To17
  • Bd3:4721383-4721763
  • TTA
  • AGGGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT            ATTTGCGGGATTTCAAAATCGCAGGAGTAGGAAAAACATAGGATTTGAATGTCATGGCATGTTGAATCCTATGGAAATTCAAAATACAGGAATGTGTAGTAGAAGTTGTTTGATTGCATCACAGAAAAAATGTATGATTTGCTTAAAAGATTATGTGATACTCATTGTTGTCAGAG
  AGGGCCTCTTTG                                                                                                                                                                                
  ||||||||||||                                                                                                                                                                                A
  TCCCGAGGAAAC                                                                                                                                                                                
AT            TAAGTTTCCTTAAAGTATCCTTTAAACTTCCCAAAATAAGGATTCCTTAAAAATGAAATATTGAGCAAACTAAATGTCCTAAACTTTGGTGCCCTTATTAAGGATACCTGATCAAACGTACGTTAAGGTTTCTTTTTAAAGGTACTCCAGGTTAGAGTACCTTTTAAAGGAAACAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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