Plant MITE

SE2550126

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1356
Brachypodium distachyon
SE2550126
PIF/harbinger
To28
Bd4:22441371-22441664
TTA
AGGCCTCATTCGTTTCACGGGA

Secondary structure and sequence

TSD TIR

5'

3'

TT   C        T    -C    TTTT     G AA   A  --   TTGAGGATTCCTTAGGGAAAATGCACCGTAGATGCATTCGTTTAGTAGGAAACAAGCAAATTGATTCCTTAGGATTCTCACAAAATTCCTTTGGTTTTGGA
  AGG CTCATTCG TTCA  GGGA    CAAAA A  TCC AA  GGA                                                                                                     
  ||| |||||||| ||||  ||||    ||||| |  ||| ||  |||                                                                                                      
  TCC GAGTAAGC AAGT  CTCT    GTTTT T  CTT TT  TCG                                                                                                     
AT   C        C    TT    --TC     G AA   -  TC   TTTGGAATTCTAACAGTATCCCACCGTGAACAGTAGGATTCTTTACCAGGTTGAAGTATAAGGATACTCTTTTTTCTCCAACCTGGATTATAAGTAAAAGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550126

TTAGGCCTCATTCGTTTCACGGGATTTTCAAAAGAAATCCAAAGGATTGAGGATTCCTTAGGGAAAATGCACCGTAGATGCATTCGTTTAGTAGGAAACAAGCAAATTGATTCCTTAGGATTCTCACAAAATTCCTTTGGTTTTGGAGGAAAATGAATATTAGGTCCAACCTCTTTTTTCTCATAGGAATATGAAGTTGGACCATTTCTTAGGATGACAAGTGCCACCCTATGACAATCTTAAGGTTTGCTCTTTTTCAATGTTTTGCTTCTCTTTGAACCGAATGAGCCCTTA

Copy Cancel