Plant MITE

SE2510127

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1357
Brachypodium distachyon
SE2510127
Tc1/Mariner
St14
Bd1:38081626-38081870
TA
TACTCCCTCCGTTCCTTAAAGATTGGCATATTAGCTTTCATTAAGACAAGCCTTTGACCACAAATTACTATATCAAGATGTATTTTATATGACGTAAAATTAGTATCGCTAGAT

Secondary structure and sequence

TSD TIR

5'

3'

                                                  C                    ATC   A   AT            A     ---      -------   --A   TC
TACTCCCTCCGTTCCTTAAAGATTGGCATATTAGCTTTCATTAAGACAAG CTTTGACCACAAATTACTAT   AAG TGT  TTTATATGACGT AAATT   AGTATC       GCT   GAT  
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||   ||| |||  |||||||||||| |||||   ||||||       |||   |||  G
ATGAGGGAGGCAAGGAGTTTCTAACCGTATAATCGAAAGTAATTCTGTTC GAAACTGGTGTTTAATGATA   TTT ACA  AAATATACTGTA TTTAG   TCATAG       TGA   CTA  
                                                  C                    CAA   A   CC            C     TGT      TACTTCA   AAA   TT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510127

TACTCCCTCCGTTCCTTAAAGATTGGCATATTAGCTTTCATTAAGACAAGCCTTTGACCACAAATTACTATATCAAGATGTATTTTATATGACGTAAAATTAGTATCGCTAGATTCGTTATCAAAAGTACTTCATGATACTTGTGATTTCATGTCATATAAACCACAATTTAACATAGTAATTTGTGGTCAAAGCCTTGTCTTAATGAAAGCTAATATGCCAATCTTTGAGGAACGGAGGGAGTA

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