Plant MITE

SE2550131

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1361
Brachypodium distachyon
SE2550131
PIF/harbinger
To4
Bd2:30817240-30817475
ATA
GGCCATGTTTGTTTAGACTTCTGTTTCAACTTTTGGTGCTTCTAGCTCTCTAAAATGCACTTCTCCCGTTTACACATGAAACTGAGAAGTACATCCGAAGGTGCTTCATGCAGCTTCTGGAGGGAAGCACCTCCCGACGTGCTTCCCAGCTTCATGGGTAAACGGAAGAAGTGCTTTTCAGAGGGCTAGAAGCAGCAAAAGCTGAAGCATAAGTCCAAACAAACAGGGCC

Secondary structure and sequence

TSD TIR

5'

3'

ATA    A         A     C       A      G               A   T        C        A      A   A       A  C A         -A G   C
   GGCC TGTTTGTTT GACTT TGTTTCA CTTTTG TGCTTCTAGCTCTCT AAA GCACTTCT CCGTTTAC CATGAA CTG GAAGTAC TC G AGGTGCTTC  T CAG 
   |||| ||||||||| ||||| ||||||| |||||| ||||||||||||||| ||| |||||||| |||||||| |||||| ||| ||||||| || | |||||||||  | ||| T
   CCGG ACAAACAAA CTGAA ACGAAGT GAAAAC ACGAAGATCGGGAGA TTT CGTGAAGA GGCAAATG GTACTT GAC CTTCGTG AG C TCCACGAAG  A GTC 
ATA    G         C     T       C      G               C   T        A        G      C   C       C  C C         GG G   T

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550131

ATAGGCCATGTTTGTTTAGACTTCTGTTTCAACTTTTGGTGCTTCTAGCTCTCTAAAATGCACTTCTCCCGTTTACACATGAAACTGAGAAGTACATCCGAAGGTGCTTCATGCAGCTTCTGGAGGGAAGCACCTCCCGACGTGCTTCCCAGCTTCATGGGTAAACGGAAGAAGTGCTTTTCAGAGGGCTAGAAGCAGCAAAAGCTGAAGCATAAGTCCAAACAAACAGGGCCATA

Copy Cancel