Plant MITE

SE2550134

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1364
Brachypodium distachyon
SE2550134
PIF/harbinger
To16
Bd3:37777607-37777907
TTA
AGGCCCTGTTTGAT

Secondary structure and sequence

TSD TIR

5'

3'

TT     C        --------ACTAAAGTT         --   TCTAGGATATAAACCACTCCAAATTAAAAAAACACTACAAACGTCAAATGGTTGTTTGGTAGGAAGTGTTTAGAGGGAATTATCCCTAATTTCCCCAACAAAACACTC
  AGGCC TGTTTGAT                 TTTGGGGTG  TTT                                                                                                            
  ||||| ||||||||                 |||||||||  |||                                                                                                            C
  TCCGG ACAAACTA                 CAGTTATCA  AAA                                                                                                            
AT     A        CAATCACATAAAAAAAT         CA   CCATGTACTCCCAAAACCCACAAGTAGAGTTTGTGAGTTTTTGGGTTTTGTGATCACAAAAAAGAATTTTTGTGATTAAACTCTTCACAAAATTAAACCATTTTTTGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550134

TTAGGCCCTGTTTGATACTAAAGTTTTTGGGGTGTTTTCTAGGATATAAACCACTCCAAATTAAAAAAACACTACAAACGTCAAATGGTTGTTTGGTAGGAAGTGTTTAGAGGGAATTATCCCTAATTTCCCCAACAAAACACTCCAGTTTTTTACCAAATTAAAACACTTCTCAAATTAGTGTTTTTAAGAAAAAACACTAGTGTTTTGGGTTTTTGAGTGTTTGAGATGAACACCCAAAACCCTCATGTACCAAAACACTATTGACTAAAAAAATACACTAACATCAAACAAGGCCTTA

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