SE2520136

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1366
  • Brachypodium distachyon
  • SE2520136
  • Mutator
  • M13
  • Bd3:22023039-22023514
  • TTTAATCAA
  • AAGAGTAAATTTCAGAGAACCACAGTTTTTTGGGCAATTGTATCGCTGAACCATACTTATTGCAAAACCGTTCGCAGAACCACACATTGTAAGGTTGTTTGTCTCAGGTAGCTCGAAACCGGGTGGTTTGGCGGCTTCACATGTTTACTTACAGGTGGGTCCCACATGTCAGATGCCAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTAATC              G       C       T     A      C                                            GTA  G T                                      C     A  T TA       G    T     A    A            ACATCGACTCGACCCGACCGGACCCGTTAACCTGCAATTAAACCCCTC
       AAGAGTAAATTTCA AGAACCA AGTTTTT GGGCA TTGTAT GCTGAACCATACTTATTGCAAAACCGTTCGCAGAACCACACATT   AG T GTTTGTCTCAGGTAGCTCGAAACCGGGTGGTTTGGCGG TTCAC TG T  CTTACAG TGGG CCCAC TGTC GATGCCATGTCG                                                
       |||||||||||||| ||||||| ||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||   || | |||||||||||||||||||||||||||||||||||||| ||||| || |  ||||||| |||| ||||| |||| ||||||||||||                                                 
       TTCTCATTTAAAGT TCTTGGT TTAAAAA CTCGT AGCATA CGACTTGGTGTGAATAGCGTTTTGGCAAGTGTCTTGGTGTGTAA   TC G CAAACAGAGTTCATCGGGCTTTGGTCTACCAAACCGCC AAGTG AC A  GAATGTC ACCC GGGTG ATAG CTACGGTGCATT                                                
AACTAAT              A       A       T     C      A                                            AAC  G T                                      A     C  T AG       G    C     A    C            AACGAATGTTCACCACTTTTAACACTGACATCCTTCCTCTTCCCCGGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3