Plant MITE

SE2550137

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1367
Brachypodium distachyon
SE2550137
PIF/harbinger
To3
Bd1:11918980-11919204
TAT
GGGCCAGTTCTTTTCGGCTTCCTGGACCGGCTTCTCTGGGAAGCTGCCCTCCCCCAGCTTCCTGGAGAAGCCGC

Secondary structure and sequence

TSD TIR

5'

3'

TAT   CCA              CCT              G     C       C  C                C  --C  -    ATTTCATTAGGTTACCAAACTAGTTTG
   GGG   GTTCTTTTCGGCTT   GGACCGGCTTCTCT GGAAG TGCCCTC CC AGCTTCCTGGAGAAGC GC   AC CTAA                           
   |||   ||||||||||||||   |||||||||||||| ||||| ||||||| || |||||||||||||||| ||   || ||||                            
   CCC   CAAGAAAAGTCGAA   CCTGGCCGAAGAGG TCTTC ACGGGAG GG TCGAAGGACCTCTTCG CG   TG TTAA                           
TAT   ACG              AAT              A     A       T  A                C  TAG  T    ATCGATCTGAAAGTTTCATCAAATCCG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550137

TATGGGCCAGTTCTTTTCGGCTTCCTGGACCGGCTTCTCTGGGAAGCTGCCCTCCCCCAGCTTCCTGGAGAAGCCGCCACCTAAATTTCATTAGGTTACCAAACTAGTTTGGCCTAAACTACTTTGAAAGTCTAGCTAAATTTGTGATGCCGCTTCTCCAGGAAGCTAGGTGAGGGCAACTTCTAGGAGAAGCCGGTCCTAAAAGCTGAAAAGAACGCACCCTAT

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