Plant MITE

SE2550145

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1375
Brachypodium distachyon
SE2550145
PIF/harbinger
To9
Bd3:10725553-10725792
TTA
AGGGTGTGTTTGAATTGAGCCCACAATTGC

Secondary structure and sequence

TSD TIR

5'

3'

TT           GAA   AGC   CA  -   ACTACAAAA       A  -    ATAATTGGTTGTACAGTTTTGGTTGCCCTTGAGTTGGCCAACTTTGGCCAAAAAATTGAACTAGAGT
  AGGGTGTGTTT   TTG   CCA  AT TGC         ATTTGGC AG CCAA                                                                   
  |||||||||||   |||   |||  || |||         ||||||| || ||||                                                                    
  TCCCACACAAA   AAC   GGT  TA ACG         GGTTTAA AA CCAG                                                                   
AT           GCA   CAA   TC  C   -----GTAC       -  A    TACCTGGTTTTAAATCATCAACAAACCTACCACCGGTTGATAAACCGCTCGGTTAAAAGAAATCAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550145

TTAGGGTGTGTTTGAATTGAGCCCACAATTGCACTACAAAAATTTGGCAAGCCAAATAATTGGTTGTACAGTTTTGGTTGCCCTTGAGTTGGCCAACTTTGGCCAAAAAATTGAACTAGAGTTGACTAAAGAAAATTGGCTCGCCAAATAGTTGGCCACCATCCAAACAACTACTAAATTTTGGTCCATGACCAAAAATTTGGCATGGCACATCTTGGAACCAAACGAAACACACCCTTA

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