SE2520147

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1377
  • Brachypodium distachyon
  • SE2520147
  • Mutator
  • M9
  • Bd1:27498061-27498568
  • TACAAAATT
  • GGGAAAGTTGGCCACAACACACCATTATTTTCCAGCCTTTGCCGAAACACATTGCTAGATTGTGTCTTTGCTCAATGCTATTATAATTTTGTGGCCATTTGCCAGGACACAACGTCTAGCCAAAACGGAAAGTTTGACTTTT

Secondary structure and sequence

TSD    TIR
5'



3'
TACAAAATT   A       C     C     A         A                    CTA     T       C   A                   C      C  G      A   C   - C         A    G      TTTTC    G TG  A     -      ---A    G         AACA    TTTTT -   TAATTGAGATCTTAGCCCCAAAAGACACTACGTAAGTGTCAGATTTGGA
         GGG AAGTTGG CACAA ACACC TTATTTTCC GCCTTTGCCGAAACACATTG   GATTG GTCTTTG TCA TGCTATTATAATTTTGTGG CATTTG CA GACACA CGT TAG C AAAACGGAA GTTT ACTTTT     TCTG A  AC CTTTG CTTGGG    GGAT ATGGTTTTG    GGTT     T TTC                                                 
         ||| ||||||| ||||| ||||| ||||||||| ||||||||||||||||||||   ||||| ||||||| ||| ||||||||||||||||||| |||||| || |||||| ||| ||| | ||||||||| |||| ||||||     |||| |  || ||||| ||||||    |||| |||||||||    ||||     | |||                                                  
         CCC TTTAACC GTGTT TGTGG AATAAAAGG CGGAAACGGCTTTGTGTAGC   CTAAC CGGAAAC AGT ATGGTAATGTTAAAGTACC GTAAAC GT TTGTGT GCG GTC G TTTTGCCTT CAAA TGAAAA     AGGT T  TG GGGGC GGACTT    TTTG TACTAAAAC    ACCT     G TAA                                                 
TTAAAACAT   C       A     C     C         C                    AGC     T       A   C                   A      A  G      G   A   A A         -    G      -----    G TA  -     T      AAAA    G         ----    ----- A   TACTAAGTTAAACTTCGATTTACGACTTGTTAAAACTTTAGTTTATTAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End