Plant MITE

SE2550148

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1378
Brachypodium distachyon
SE2550148
PIF/harbinger
To21
Bd3:29037503-29037782
TTA
AGGCTACTCATAGTGGGAGTAACTTAGGTAGTAACAT

Secondary structure and sequence

TSD TIR

5'

3'

TT     AC          -      T   -          -        AACTAGGCATTTTGGTGACATGACATGGTATTAAATGAAGAAAAAGAGAGAGGTGGTAACTAGATATGTTACCATAACATCACACAAATCA
  AGGCT  TCATAGTGGG AGTAAC TAG GTAGTAACAT AAGATGCC                                                                                           
  |||||  |||||||||| |||||| ||| |||||||||| ||||||||                                                                                           A
  TCCGA  AGTATCACCC TCATTG ATC CATCATTGTA ATATACAA                                                                                           
AT     CC          C      T   T          C        TGATCAGGTTCAATAGTGGAGGTATTACCCATCATTGTATATACACCACAGTACGTAATACAGTAAATAATACAACATCTGAGTAGAATGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550148

TTAGGCTACTCATAGTGGGAGTAACTTAGGTAGTAACATAAGATGCCAACTAGGCATTTTGGTGACATGACATGGTATTAAATGAAGAAAAAGAGAGAGGTGGTAACTAGATATGTTACCATAACATCACACAAATCAAAGTAAGATGAGTCTACAACATAATAAATGACATAATGCATGACACCACATATATGTTACTACCCATTATGGAGGTGATAACTTGGACTAGTAACATATACATGTTACTACTCTATGTTACTCCCCACTATGACCAGCCTTA

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