Plant MITE

SE2550149

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1379
Brachypodium distachyon
SE2550149
PIF/harbinger
To2
Bd1:18838765-18839031
TTA
AGGGCTCATTCGATTTG

Secondary structure and sequence

TSD TIR

5'

3'

TT      C     A    --C    ATTTTAGAGGATTTTCACAGGAATTCAAAACTAAGGATTTTTCCTATGGGTAGCATTCGTTTCATAGGAATTGATGTTTTAGATTCCTAAGGATTGGTCTCAAATTGA
  AGGGCT ATTCG TTTG   GGGA                                                                                                            
  |||||| ||||| ||||   ||||                                                                                                            A
  TCCCGG TAAGC AAAC   CTAA                                                                                                            
AT      A     C    TTC    AACTTTAGTACCTTATCCTTTTCATCTCCTAACTCTACAGTACGTGTAAAGTTAGGAATCCTTAAAATTTACTCCAGAGTGGATTACACATCTTAGGAATCCTTAATC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550149

TTAGGGCTCATTCGATTTGCGGGAATTTTAGAGGATTTTCACAGGAATTCAAAACTAAGGATTTTTCCTATGGGTAGCATTCGTTTCATAGGAATTGATGTTTTAGATTCCTAAGGATTGGTCTCAAATTGAACTAATTCCTAAGGATTCTACACATTAGGTGAGACCTCATTTAAAATTCCTAAGGATTGAAATGTGCATGACATCTCAATCCTCTACTTTTCCTATTCCATGATTTCAAAATCCTTCAAACCGAATAGGCCCTTA

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