SE2550150

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1380
  • Brachypodium distachyon
  • SE2550150
  • PIF/harbinger
  • To11
  • Bd5:24197977-24198150
  • TAA
  • AGGCTCAGTTTGGCATTGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA      A            -TG      GCTGTGCTGAACTTATTTTATAATCTGCTGTGGAAAAATGCACACGAAAGTAGGAAA
  AGGCTC GTTTGGCATTGC   AACTGT                                                         
  |||||| ||||||||||||   ||||||                                                         A
  TCCGAG CAAACCGTAACG   CCTAAT                                                         
AA      G            CCA      AGTATTAGGGCAAGAAAAGTGGGCGTAAATTGATAAAAGTACAAACCGATTGGTTGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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