Plant MITE

SE2550152

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1382
Brachypodium distachyon
SE2550152
PIF/harbinger
To14
Bd5:21413520-21413844
TTG
GCAGCTTGTTTGGCACCCCTCATT

Secondary structure and sequence

TSD TIR

5'

3'

TT                  C     ---  --       --   GTACAAATGAAATGAAATCTAATTTTTGGTACGATTTCATTTGGTTGAATTTGAATTCCGGATTCAAAAATCATGTTTGTCTACCACATGGATTTGTAGAGTTAGAGACAATTCCAGAGAA
  GCAGCTTGTTTGGCACCC TCATT   TC  ATTTCAT  TTG                                                                                                                         
  |||||||||||||||||| |||||   ||  |||||||  |||                                                                                                                          
  TGTCGAACAAACCGTGGG AGTAA   CT  TCTTAAC  CTT                                                                                                                         
AT                  T     AAC  GA       AC   AAGTAAAACTTAAGATCTTTGATTGAACAAACCAACCGTGCATTAACTGATGTACTTAAGTTAAACGTTAAGGTACCTTAGTGTTATGTTGATTGGAGTTAAGGAGAGATGTTCGGTAGTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550152

TTGCAGCTTGTTTGGCACCCCTCATTTCATTTCATTTGGTACAAATGAAATGAAATCTAATTTTTGGTACGATTTCATTTGGTTGAATTTGAATTCCGGATTCAAAAATCATGTTTGTCTACCACATGGATTTGTAGAGTTAGAGACAATTCCAGAGAAATGATGGCTTGTAGAGAGGAATTGAGGTTAGTTGTATTGTGATTCCATGGAATTGCAAATTGAATTCATGTAGTCAATTACGTGCCAACCAAACAAGTTAGTTTCTAGAATTCAAAATGAATTCCACAATTCTAGTCCAAAATGATGGGTGCCAAACAAGCTGTTA

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