Plant MITE

SE2510153

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1383
Brachypodium distachyon
SE2510153
Tc1/Mariner
St15
Bd5:19889527-19889745
TA
TACTCCCTCCGTCCCATAATATGAGGCACGCACGCATCCCTAGATACTCAATTTGATTAATTAAATAT

Secondary structure and sequence

TSD TIR

5'

3'

                                        T    AC        A            -------   T   TTTTAACAAAAAGTACATCATTAGATTCGTT
TACTCCCTCCGTCCCATAATATGAGGCACGCACGCATCCC AGAT  TCAATTTG TTAATTAAATAT       GTA CTT                               
|||||||||||||||||||||||||||||||||||||||| ||||  |||||||| ||||||||||||       ||| |||                               A
ATGAGGGAGGCAGGGTATTATACTTCGTGCGTGCGTAGGG TCTA  AGTTAAAT GATTAGTTTATA       TAT TAA                               
                                        T    AC        C            TTTAATT   -   TTTTTTAATATAGTAATCTTTCAAGAAAACT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510153

TACTCCCTCCGTCCCATAATATGAGGCACGCACGCATCCCTAGATACTCAATTTGATTAATTAAATATGTATCTTTTTTAACAAAAAGTACATCATTAGATTCGTTATCAAAAGAACTTTCTAATGATATAATTTTTTAATTATTTAATTTATATTTGATTAGCTAAATTGACAATCTTGGGATGCGTGCGTGCTTCATATTATGGGACGGAGGGAGTA

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