SE2550154

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1384
  • Brachypodium distachyon
  • SE2550154
  • PIF/harbinger
  • To21
  • Bd5:19205229-19205506
  • TGA
  • AGGCTGGTCATAGTGGGGAGTAACTTAGAATAGTAACATG

Secondary structure and sequence

TSD    TIR
5'



3' 
TG               GG         A  A          C       -----      CTA --  -  CTACCTCCATAGTTGGTAGTAACATATATGTGGTGTCATGCATTTTGTCATTAATTATGTTGTAGACTCATCTT
  AGGCTGGTCATAGTG  GAGTAACTT GA TAGTAACATG ATATGTT     ACTACT   A  AT TA                                                                          
  |||||||||||||||  ||||||||| || |||||||||| |||||||     ||||||   |  || ||                                                                           
  TCCGATCAGTATCAC  TTCATTGAA CT ATCATTGTAT CTACAGT     CGTAAA   A  AC GT                                                                          
AG               -G         C  -          -       TGATT      --- AT  T  ACCGTACCGTTATTTACTTCTTTCTCTCTCTCCACCATTGATCTATACAATGTATTGTAGTGTGTTTAGTTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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