SE2520155

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1385
  • Brachypodium distachyon
  • SE2520155
  • Mutator
  • M6
  • Bd1:32657256-32657607
  • TTATCAATT
  • GAGTAAAATACACCACTACTCCATAAACTTGGAGGAAATGAACACTTTAGTCCATGAAGTCAGAAAACGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTATCAATT                  C  C                                    G            CACATAG                          G       -CA         CG  A    -A                     A     -  A AA
         GAGTAAAATACACCACTA TC ATAAACTTGGAGGAAATGAACACTTTAGTCCATGAA TCAGAAAACGCA       ATCCATGAATTCGTGTTAGTGGTACA ATTAGTC   AAAACGGTT  GA AGGT  AAAGGTGGACATGTGGCACGA CCTAG CT C  
         |||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||       |||||||||||||||||||||||||| |||||||   |||||||||  || ||||  ||||||||||||||||||||| ||||| || |  G
         CTCATTTTATGTGGTGAT AG TATTTGAGCCTTCTTTACTTGTGAAATCAGGTGCTT AGTCTTTTGCGT       TAGGTACTTGAGTACAATCACTATGT TAATCAG   TTTTGCCAA  CT TTCA  TTTTCACCTGTGCACCGTGCT GGATT GG G  
TTAACTATT                  C  -                                    G            TTCTCTA                          G       TCC         -A  C    GA                     A     T  C CC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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