Plant MITE

SE2510156

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1386
Brachypodium distachyon
SE2510156
Tc1/Mariner
St5
Bd1:19526251-19526495
TA
TACTCCCTCCATTTCACAAAGGTCGGCGTATTTTGTTTCGTTAAGACAAGCCTTTGACC

Secondary structure and sequence

TSD TIR

5'

3'

                       C                          C        AAAAATT        A      ----     ATATGATACGAAACCATGATCGTTAGCAAGAACT
TACTCCCTCCATTTCACAAAGGT GGCGTATTTTGTTTCGTTAAGACAAG CTTTGACC       ACTCTATT ATATGT    AAGTT                                  
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||       |||||||| ||||||    |||||                                  T
ATGAGGGAGGTAAAGTGTTTCCA CCGCATAAAACAAAGCAATTCTGTTC GAAACTGG       TGAGATAA TATACA    AAAGT                                  
                       A                          C        ATACTTT        C      CAAA     ATGTACTTTAAATATAGTTACCTAAGCAGAAATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510156

TACTCCCTCCATTTCACAAAGGTCGGCGTATTTTGTTTCGTTAAGACAAGCCTTTGACCAAAAATTACTCTATTAATATGTAAGTTATATGATACGAAACCATGATCGTTAGCAAGAACTTTTAAAGACGAATCCATTGATATAAATTTCATGTATGAAAAAACACATATCAATAGAGTTTTCATAGGTCAAAGCCTTGTCTTAACGAAACAAAATACGCCAACCTTTGTGAAATGGAGGGAGTA

Copy Cancel