SE2520157

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1387
  • Brachypodium distachyon
  • SE2520157
  • Mutator
  • M1
  • Bd2:7835271-7835675
  • TTAGAAAAA
  • GGGATTTATAATGAGCGAACGTTCGCTCTTTAGTCTCTCGGAGCGA

Secondary structure and sequence

TSD    TIR
5'



3'
TTAGAAAAAC     -TT   AT                      -C   C  A    -   T   ATT    --  TC   - GGAAAGATTATGGCTGGGATCGTGCCACGTGTCTTTGTGGGGTGACAAGTTTAGTCCGTGGATGGCAACTTTTAGTATGTAGAGTGGCAGCTTTATTCTCTGAAGGTGGCAACTTTAGTTCTATA
          GGGAT   ATA  GAGCGAACGTTCGCTCTTTAGT  TCT GG GCGA ACG TCT   GGCC  AT  GAT C                                                                                                                             
          |||||   |||  ||||||||||||||||||||||  ||| || |||| ||| |||   ||||  ||  ||| |                                                                                                                             C
          CCCTA   TAT  CTCGCTTGCAAGCGAGAGATCG  AGA CC CGCT CCC ATT   TCAA  GT  CGG G                                                                                                                             
 AAAAAGATT     CCT   CC                      AA   -  G    G   -   ---    CG  --   A CGTCTTGATTTCAACGGTAGCAGTGTCTGATTTCAACGGCCGGAGTATCTTGATTTCAACGGTAGAGTGCGTTGATTTTGCAAACGAGGTATCAGAAGATCGCGCTGCTCTGTTTCAACGGTAGG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End