Plant MITE

SE2520158

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1388
Brachypodium distachyon
SE2520158
Mutator
M2
Bd1:34948599-34948806
ATATTTTAT
GGTTTTGCTATTTCTTAGGCGACTGAGAAATAACAATTTCTTAGTC

Secondary structure and sequence

TSD TIR

5'

3'

ATATTTTATC  TTT  -           G  A          ACA           ------   GATAACAACCTTTTTATTCAATCATTGAGATTCGTGTAAGAT
          GG   TG CTATTTCTTAG CG CTGAGAAATA   ATTTCTTAGTC      GGT                                          
          ||   || ||||||||||| || ||||||||||   |||||||||||      |||                                           
          CC   AC GATAAAGAGTC GC GATTCTTTAT   TAAAGAGTCAG      ACA                                          
 TATTTTATA  CTC  A           A  G          CAA           TTGTTA   TCGGTAGGTTAGTTCTAAAAGAATAGGTAACCTGGATGTAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2520158

ATATTTTATCGGTTTTGCTATTTCTTAGGCGACTGAGAAATAACAATTTCTTAGTCGGTGATAACAACCTTTTTATTCAATCATTGAGATTCGTGTAAGATTAATGTAGGTCCAATGGATAAGAAAATCTTGATTGGATGGCTACAATTGTTGACTGAGAAATAACTATTTCTTAGGCGACTGAGAAATAGACACTCCCATATTTTAT

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