SE2510162

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1392
  • Brachypodium distachyon
  • SE2510162
  • Tc1/Mariner
  • St3
  • Bd4:3053876-3054137
  • TA
  • TACTACCTCCATTCCTAAATGTAAGAAGTCCTAGCTTTGTCCCAAGTCAAACTTTTTCAAGTTTGACCAAGTTTATAGAAAAATATAGTAATATCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
    A     A                               C              C                          A  G         CAAA     AATCAGTATACCACGAAGATATATAT
TACT CCTCC TTCCTAAATGTAAGAAGTCCTAGCTTTGTCC AAGTCAAACTTTTT AAGTTTGACCAAGTTTATAGAAAAAT TA TAATATCTA    TATCA                          
|||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| || |||||||||    |||||                          C
ATGA GGAGG AAGGATTTACATTCTTCAGGATCGAAACAGG TTCAGTTTGAAGAA TTCAAACTGGTTCAAATATCTTTTTA AT GTTATAGAT    TTGAG                          
    G     C                               A              T                          G  G         ---A     GTTCATTCAAAATAATTCAGATAGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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