Plant MITE

SE2520165

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1395
Brachypodium distachyon
SE2520165
Mutator
M5
Bd4:5565550-5565768
ATGAATAAT
GGTTTTGCTATTGATAAGTCGCCTGTTTTTTAACTAGAGATCAATCAACATGTTAGC

Secondary structure and sequence

TSD TIR

5'

3'

ATGAATAATC   TTT      GA                   --CTA   --------       AAC     ----   CATC  --  CTTGATCCAACGATAGAAAGTGAGAGATG
          GGT   GCTATT  TAAGTCGCCTGTTTTTTAA     GAG        ATCAATC   ATGTT    AGC    GG  AT                             
          |||   ||||||  |||||||||||||||||||     |||        |||||||   |||||    |||    ||  ||                              
          CCA   CGATAA  ATTTAGTGGACAAAAAATT     CTC        TAGTTAG   TACAA    TCG    CA  CC                             
TAATAAGTAC   CAC      AG                   CTTTA   CAAATTTA       --C     AGTC   ---A  AC  AATTCTAGACTCCCAGTAGGGGTGAGAGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2520165

ATGAATAATCGGTTTTGCTATTGATAAGTCGCCTGTTTTTTAACTAGAGATCAATCAACATGTTAGCCATCGGATCTTGATCCAACGATAGAAAGTGAGAGATGAGAGAGTGGGGATGACCCTCAGATCTTAACCCAACAGCTCTGAAACATCGATTGATATTTAAACCTCATTTCTTAAAAAACAGGTGATTTAGAAATAGCCACACCCATGAATAAT

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