SE2550168

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1398
  • Brachypodium distachyon
  • SE2550168
  • PIF/harbinger
  • To3
  • Bd1:50769964-50770189
  • TTA
  • AGGGCCAGTTCTTTTCGGCTTCCTGGACCGGCTTCTCTGAGAAGCTGTCCTATCCCAGCTTCTTGGAGAAGCCGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT    CCA               CT              G            AT  C                C  TACC        A   A   A     C      GGC
  AGGG   GTTCTTTTCGGCTTC  GGACCGGCTTCTCT AGAAGCTGTCCT  CC AGCTTCTTGGAGAAGC GC    TAAATTTG TTA GCT CCAAA TAGTTT   
  ||||   |||||||||||||||  |||||||||||||| ||||||||||||  || |||||||||||||||| ||    |||||||| ||| ||| ||||| ||||||    
  TCCC   CAAGAAAAGCCGAAG  CCTGGCCGAAGAGG TCTTCGACGGGA  GG TCGAAGGACCTCTTCG CG    GTTTAAAT GAT TGA GGTTT ATCAAA   
AT    ACG               AT              A            GT  A                A  TAGT        C   C   A     T      ATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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