SE2550170

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1400
  • Brachypodium distachyon
  • SE2550170
  • PIF/harbinger
  • To3
  • Bd2:9006330-9006554
  • TAT
  • GGCCTCCTCCTTTTCGGTTTCTAGGATGGGCTTCTCCGAGAAGCTGCTCTCACCCAGCTTCCTGGAGAAGCCGCATGTGAAATTTTGTTAGGCTTCCAAATTAGGTTAGCCTAACCTAATCTGGAAACCTAGCAAAAAATTTAGGGCGGCTTCTCCCGGAAGCTGAGGGGGAGCAGCTTCACCGAGAAGCACGTCCTGGAAGCCGAAAAGAAGTGGGCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAT     C  C                   G       C A            A  -        T           A G    -A          C     A         G
   GGCCT CT CTTTTCGGTTTCTAGGATG GCTTCTC G GAAGCTGCTCTC CC CAGCTTCC GGAGAAGCCGC T TGAA  TTTTGTTAGG TTCCA ATTAGGTTA 
   ||||| || ||||||||||||||||||| ||||||| | |||||||||||| || |||||||| ||||||||||| | ||||  |||||||||| ||||| ||||||||| C
   TCGGG GA GAAAAGCCGAAGGTCCTGC CGAAGAG C CTTCGACGAGGG GG GTCGAAGG CCTCTTCGGCG G ATTT  AAAACGATCC AAGGT TAATCCAAT 
TAT     T  A                   A       C A            -  A        C           - G    AA          A     C         C
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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