Plant MITE

SE2530171

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1401
Brachypodium distachyon
SE2530171
hAT
Hat17
Bd1:24202144-24202316
ACCTTAGA
CTTAGACAGTGG

Secondary structure and sequence

TSD TIR

5'

3'

AC  T  -A      ---CA   C -  T   GTACA       -  AAATGAACCCAATGAAATATGTATTTCCTTCATTAATCTAGTCTTT
  CT AG  CAGTGG     GAG T AC ATA     ATTGGGT TC                                              
  || ||  ||||||     ||| | || |||     ||||||| ||                                              G
  GA TC  GTCACC     AAT C CT TTT     TGTGGTA CC                                              
 A  T  CA      ACTTC   - T  -   -----       A  CAAGTTAGGGAAACCAATACCACATTAAAAAGTGATTATTTATTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2530171

ACCTTAGACAGTGGCAGAGCTACTATAGTACAATTGGGTTCAAATGAACCCAATGAAATATGTATTTCCTTCATTAATCTAGTCTTTGATTTATTTATTAGTGAAAAATTACACCATAACCAAAGGGATTGAACCCAATGGTGTTTTTCTCTAACTTCACCACTGACCTTAGA

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