SE2550175

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1405
  • Brachypodium distachyon
  • SE2550175
  • PIF/harbinger
  • To11
  • Bd2:38923799-38923972
  • TAA
  • AGGCTCAGTTTGGCATTGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA     CA            CGAAC  T    ---C  TGAACTTATTTTATAATCTGCTGTGAAAAAATACACACAAAAGTATGGAAAA
  AGGCT  GTTTGGCATTGC     TG GCTG    GC                                                    
  |||||  ||||||||||||     || ||||    ||                                                    G
  TCCGA  CAAACCGTAACG     CC ACCT    GT                                                    
AA     CG            -----  -    AAGA  ATTAGGGCAAAAAGAGTGGGCGAAAAGTGATAAAAGCACAAACCGATTGGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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