Plant MITE

SE2520177

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1407
Brachypodium distachyon
SE2520177
Mutator
M2
Bd4:36750947-36751154
ATAAAATAA
GG

Secondary structure and sequence

TSD TIR

5'

3'

ATAAAATAAC  TTTTGC          GC    G       AC       A        CTA   A          C    ACTAAGATTCGTGCAAGATCCA
          GG      TATTTCTTAG  GACT AGAAATA  TATTTCT AGTCAATG   ATA CCGTTTGATC AATC                      
          ||      ||||||||||  |||| |||||||  ||||||| ||||||||   ||| |||||||||| ||||                      C
          CC      ATAAAGAGTC  CTGA TCTTTAT  ATAAAGA TCAGTTGC   TAT GGTAGGCTAG TTCT                      
AATAAAATAC  TCACAA          AA    A       CA       G        TAG   C          -    AAAAGAATAGGAAACATGAACA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2520177

ATAAAATAACGGTTTTGCTATTTCTTAGGCGACTGAGAAATAACTATTTCTAAGTCAATGCTAATAACCGTTTGATCCAATCACTAAGATTCGTGCAAGATCCACACAAGTACAAAGGATAAGAAAATCTTGATCGGATGGCTATGATCGTTGACTGAGAAATAACTATTTCTAAGTCAACTGAGAAATAAACACTCCCATAAAATAA

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