Plant MITE

SE2510183

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1413
Brachypodium distachyon
SE2510183
Tc1/Mariner
St3
Bd4:7177169-7177429
TA
TACTACCTCCGTTCCTAAATATAAGTAGTCCTAGTTTTGTCCTAAGTCAAACTTATTCAAGTTTGACCAAGCTTACAGGAAATTCTACCGACATCTAGAACTCTAAATTAGTTT

Secondary structure and sequence

TSD TIR

5'

3'

    A                    T        T                   A                C   C        C   C  C        CTC     T     TATTAAAT    C  TA
TACT CCTCCGTTCCTAAATATAAG AGTCCTAG TTTGTCCTAAGTCAAACTT TTCAAGTTTGACCAAG TTA AGGAAATT TAC GA ATCTAGAA   TAAAT AGTTT        CTGT AT  
|||| |||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||| ||| |||||||| ||| || ||||||||   ||||| |||||        |||| ||  T
ATGA GGAGGCAAGGATTTATATTC TCAGGATC AAACAGGATTCAGTTTGAA AAGTTCAAACTGGTTC AAT TCTTTTAA ATG TT TAGATTTT   GTTTA TCAGG        GATA TA  
    G                    T        C                   G                A   A        T   A  A        ATA     C     -TCATACT    -  TA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510183

TACTACCTCCGTTCCTAAATATAAGTAGTCCTAGTTTTGTCCTAAGTCAAACTTATTCAAGTTTGACCAAGCTTACAGGAAATTCTACCGACATCTAGAACTCTAAATTAGTTTTATTAAATCTGTCATTATATATATAGTCATACTGGACTCATTTGATATTTTAGATATTAGTATAATTTTCTATAAACTTGGTCAAACTTGAAGAAGTTTGACTTAGGACAAACCTAGGACTTCTTATATTTAGGAACGGAGGGAGTA

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