SE2520186

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1416
  • Brachypodium distachyon
  • SE2520186
  • Mutator
  • M2
  • Bd4:21298731-21298938
  • TTAGAAATA
  • GGGAGTGTCTATTTCTCAGTCGCCTAAGAAATAGTTATTTCTTAGTCAACAATCGCAGCCATCCAATCAAGATTT

Secondary structure and sequence

TSD    TIR
5'



3'
 TTAGAAATA  GAG  T        C  T  C  A                     AAC   C      -----  C      ---      -TTTTATCCATCG GC
          GG   TG CTATTTCT AG CG CT AGAAATAGTTATTTCTTAGTC   AAT GCAGCC     AT CAATCA   AGATTT             G  
          ||   || |||||||| || || || |||||||||||||||||||||   ||| ||||||     || ||||||   ||||||             |  C
          CC   AC GATAAAGA TC GC GA TCTTTATTGATAAAGAGTTAG   TTA TGTTGG     TA GTTAGT   TCTAAG             C  
ATAAAGATTG  AAA  -        A  C  T  C                     CTA   T      AAAAC  A      GAC      TACATTCTAATAA AT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End