SE2520188

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1418
  • Brachypodium distachyon
  • SE2520188
  • Mutator
  • M21
  • Bd5:18526960-18527401
  • TGTATTTTA
  • TAGAGTAAAATGCACTCACGGTCATTGAACTCGGTTGCGATTCTCAGTTTAGTCATTGTATTTTGGAAATCGAAAGTTACGGTCCATGAACTTGACGAAATGTCTCACATATGGTCACCGTTACCGTATTTTGTATATATCGGTCCGTATCATGTGCCAGCT

Secondary structure and sequence

TSD    TIR
5'



3'
TGTATTT            C                  CG   -G       C                                       CA         C  AAT    C      G       T               A        C     A          ----CA -  CAAACTTTTGCAATTTTTTTCCCTGAAAAATAATTCACAAGGAC
       TAGAGTAAAATG ACTCACGGTCATTGAACT  GTT  CGATTCT AGTTTAGTCATTGTATTTTGGAAATCGAAAGTTACGGTC  TGAACTTGA GA   GTCT ACATAT GTCACCG TACCGTATTTTGTAT TATCGGTC GTATC TGTGCCAGCT      G CA                                            
       |||||||||||| ||||||||||||||||||  |||  ||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||| ||   |||| |||||| ||||||| ||||||||||||||| |||||||| ||||| ||||||||||      | ||                                            C
       GTCTCATTTTAC TGAGTGCCAGTGATTTGA  CAA  GCTAAGA TTGAATCAGTGACATAAAACTTTTAGCTTTCAATGCCAG  ACTTGAACT CT   TAGG TGTATG CAGTGGC ATGGCATAAAACATG ATAGTCAG CATAG ACATGGTTGA      C TA                                            
ATCTTAT            A                  -A   AA       A                                       AC         A  ATT    A      A       C               C        T     G          AACAAA C  AAAAACGTAAACCGGGGAGCTTTTTTTACGTTTTTTACGCTAGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End