Plant MITE

SE2550189

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1419
Brachypodium distachyon
SE2550189
PIF/harbinger
To23
Bd1:31141652-31141973
TTA
AGGTAGTGTTTGGTTGAGATC

Secondary structure and sequence

TSD TIR

5'

3'

TT               -G   T ATGAACTA    -    TGGAATGGTTCCAAAAGTTGAGATGATTCCCGTGTTTGGTTCTTAGAACACAGAGAAATGGAATGGAACCATATGGTTCCTCAAAAGGGAATATTCCCTCAATATGCCTAACCATCTCATTC
  AGGTAGTGTTTGGTT  AGA C        GAAT GTAA                                                                                                                          
  |||||||||||||||  ||| |        |||| ||||                                                                                                                           
  TCCATCACAAACCAA  TCT G        CTTA CTTG                                                                                                                          
AT               GA   C --ATCCAC    C    CCTTGCCAAGATAAGAATATCCTTACCTTACATTACCTTGCCAAGATGAAAAGATATAGGATTCTTGGTTTGTAAATCTAGTGACCAAGATGAACATTGGTTGAGTAAGGATGTAAAAACTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550189

TTAGGTAGTGTTTGGTTGAGATCATGAACTAGAATGTAATGGAATGGTTCCAAAAGTTGAGATGATTCCCGTGTTTGGTTCTTAGAACACAGAGAAATGGAATGGAACCATATGGTTCCTCAAAAGGGAATATTCCCTCAATATGCCTAACCATCTCATTCCTCAAAAATGTAGGAATGAGTTGGTTACAAGTAGAACCAGTGATCTAAATGTTTGGTTCTTAGGATATAGAAAAGTAGAACCGTTCCATTACATTCCATTCCTATAAGAATAGAACCGTTCCGTTCCATTCCACCTAGCTCTAGAACCAAACACTACCTTA

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