SE2520190

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1420
  • Brachypodium distachyon
  • SE2520190
  • Mutator
  • M22
  • Bd2:41265464-41265767
  • CTGTATGAA
  • TATGAAGGGAATGTATCAGATGAAAACCTCTATTCAGTGAAAACCTGAAAACTTTTAATCCTAGCCATTAGATCTCAAATAAATGGATCCGATGAAAGGTGGAGCCTCTAATCACTTAAATAATTTTATGGAA

Secondary structure and sequence

TSD    TIR
5'



3'
CTG    A   -GA         A       C            A   C         T         --                        CC                      CAC      -A        -   ------AAAA     AC
   TATG AGG   ATGTATCAG TGAAAAC TCTATTCAGTGA AAC TGAAAACTT TAATCCTAG  CCATTAGATCTCAAATAAATGGAT  GATGAAAGGTGGAGCCTCTAAT   TTAAAT  ATTTTATG GAA          ATTAG  
   |||| |||   ||||||||| ||||||| |||||||||||| ||| ||||||||| |||||||||  ||||||||||||||||||||||||  ||||||||||||||||||||||   ||||||  |||||||| |||          |||||   
   GTAT TCC   TATATAGTC ACTTTTG AGATAAGTCGCT TTG ACTTTTGAA GTTAGGATC  GGTAATCTAGAGTTTATTTGCCTA  CTACTTTCCACCTTGGAGATTA   AATTTG  TAAAATAC CTT          TAATC  
 AA    G   AAC         C       T            C   A         T         CT                        TT                      ATT      AG        T   AGGAATGCAC     TC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End