Plant MITE

SE2510193

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1423
Brachypodium distachyon
SE2510193
Tc1/Mariner
St16
Bd2:42450684-42450907
TA
CCTCCGATCCATAAAAAGTGTGGCCCACTTAGTAT

Secondary structure and sequence

TSD TIR

5'

3'

TACTC                     G  C  C  A    AAAATTT                                     ATT       A   C     T   CTAA
     CCTCCGATCCATAAAAAGTGT GC CA TT GTAT       GTACTTCCTTCGTCTGACAAAAGATGTCTCAAGTTTG   AAATTTG ATG ATCTA ACA    
     ||||||||||||||||||||| || || || ||||       |||||||||||||||||||||||||||||||||||||   ||||||| ||| ||||| |||     
     GGAGGCTAGGTATTTTTCACA TG GT AA CATG       CATGAGGGAGGCAGGTTGTTTTTTACAGAGTTCAAAC   TTTAAAC TAC TAGAT TGT    
ATCAA                     G  A  A  A    ATTCAAT                                     AGT       C   A     C   ACTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510193

TACTCCCTCCGATCCATAAAAAGTGTGGCCCACTTAGTATAAAATTTGTACTTCCTTCGTCTGACAAAAGATGTCTCAAGTTTGATTAAATTTGAATGCATCTATACACTAAGTCATGTCTAGATACATCCAAATTTTGACAAACTTGAGACATTTTTTGTTGGACGGAGGGAGTACTAACTTAGTACAAAATGAGTGACACTTTTTATGGATCGGAGGAACTA

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