Plant MITE

SE2540201

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1431
Brachypodium distachyon
SE2540201
CACTA
Ca2
Bd4:6057804-6058056
TAC
CACTACCTCACGGTAGA

Secondary structure and sequence

TSD TIR

5'

3'

TAC      C  A G     CGTTT   -C     -     ---   CGCACTTTGCTCAAATATAGTTACTTTTGGTTTCTTACCGCACTTTTAGCACTTCAACCGCAGATTTTGCCAATAAAAATGCG
   CACTAC TC C GTAGA     GCC  GCACT ATGTT   AGC                                                                                   
   |||||| || | |||||     |||  ||||| |||||   |||                                                                                   T
   GTGATG AG G CATCT     TGG  CGCGT AGGTT   CGT                                                                                   
CAT      C  C G     ---AT   CC     A     TCA   AATTAAACCCAAATTTCACGCAGTTTAAGTATAAGCACCGTAAAATTTTCACGACGTATATGAGTACAACCGTTTTTATAAAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2540201

TACCACTACCTCACGGTAGACGTTTGCCCGCACTATGTTAGCCGCACTTTGCTCAAATATAGTTACTTTTGGTTTCTTACCGCACTTTTAGCACTTCAACCGCAGATTTTGCCAATAAAAATGCGTCAAATATTTTTGCCAACATGAGTATATGCAGCACTTTTAAAATGCCACGAATATGAATTTGACGCACTTTAAACCCAAATTAATGCACTTTGGAATGCGCCCGGTTATCTACGGCGACGTAGTGTAC

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