Plant MITE

SE2510202

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1432
Brachypodium distachyon
SE2510202
Tc1/Mariner
St10
Bd2:45544145-45544391
TA
TACTTCCTCCGTCCCATATTAAGTGACGAAATATTACATGTATCTAGACGCTTTTTGGGTACAGATACATTCATATTTGGGCAAATTTGAGTCACTTAATATGGGACGGAGGGAGTAT

Secondary structure and sequence

TSD TIR

5'

3'

           TC        AG  A                                   C                             T  C          A            AAGAG
TACTTCCTCCG  CCATATTA  TG CGAAATATTACATGTATCTAGACGCTTTTTGGGTA AGATACATTCATATTTGGGCAAATTTGAG CA TTAATATGGG CGGAGGGAGTAT     
|||||||||||  ||||||||  || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||| ||||||||||||     A
ATGAGGGAGGC  GGTATAAT  AC GTTTTGTAATGTACATAGATCTGCGAAAAATCCGT TCTATGTAGGTATGAACCTGTTTAAACTC GT AATTATACCT GCCTCCCTCATA     
           TA        CA  A                                   A                             T  T          A            AATCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510202

TACTTCCTCCGTCCCATATTAAGTGACGAAATATTACATGTATCTAGACGCTTTTTGGGTACAGATACATTCATATTTGGGCAAATTTGAGTCACTTAATATGGGACGGAGGGAGTATAAGAGAACTAAATACTCCCTCCGATCCATATTAATTGTCTCAAATTTGTCCAAGTATGGATGTATCTATGCCTAAAAAGCGTCTAGATACATGTAATGTTTTGACAACTAATATGGATCGGAGGGAGTA

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