Plant MITE

SE2520204

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1434
Brachypodium distachyon
SE2520204
Mutator
M25
Bd3:41345300-41345589
TTCAAGCAC
CGACGTATTAGATGAAAACCTCTATTTAGTGCAAACTTGAAAACTTCCCGTCGCAGCCATTAGATCTCAAATATACGGTTTAGATGAAA

Secondary structure and sequence

TSD TIR

5'

3'

TTCAAGCACGA           A      C        A        T           C    CAG          TC     T    TTT  A     ----   GGAACCTATAACCACTTAGACATTTTATGAAAAACCCACG
           CGACGTATTAG TGAAAA CTCTATTT GTGCAAAC TGAAAACTTCC GTCG   CCATTAGATC  AAATA ACGG   AG TGAAA    AGG                                        
           ||||||||||| |||||| |||||||| |||||||| ||||||||||| ||||   ||||||||||  ||||| ||||   || |||||    |||                                         
           GCTGCATAATT ACTTTT GAGATAAG CACGTTTG ACTTTTGAAGG TAGT   GGTAATCTGG  TTTAT TGCC   TC ATTTT    GTG                                        
CAGTAACTTCC           C      A        C        T           T    ATA          TA     T    TAC  C     GAAA   AATTTACGTAAAATACTTTTAGGGAATCTCTTAGGATTGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2520204

TTCAAGCACGACGACGTATTAGATGAAAACCTCTATTTAGTGCAAACTTGAAAACTTCCCGTCGCAGCCATTAGATCTCAAATATACGGTTTAGATGAAAAGGGGAACCTATAACCACTTAGACATTTTATGAAAAACCCACGAGTTAGGATTCTCTAAGGGATTTTCATAAAATGCATTTAAGTGAAAGTTTTACCTCATCCGTTTATTTATGGTCTAATGGATATGATTGGAAGTTTTCATGTTTGCACCGAATAGAGATTTTCACTTAATACGTCGCCTTCAATGAC

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