SE2520205

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1435
  • Brachypodium distachyon
  • SE2520205
  • Mutator
  • M14
  • Bd1:22380108-22380667
  • AACAATTAA
  • GGGTTAATTGGATCTATGCCACTCTCTATTCCACTAGTTAGAGATATGTCATTACAAAAACTTGACTTGGAGAAATGCCACTCTAACTTTCTTATACCTCTATCAATGCCATTTTGTCCA

Secondary structure and sequence

TSD    TIR
5'



3'
AACAATTAA                       CTC    C    A   A                                     C          TTC     C                       ATCCCA  A  TAT     - --T        A  GACA    TCTA   G      T   TTT   ----     ----AAG     C GTTCTATTCTTCTTATCCCCACGCGCTCCTCATATCACGTCCCCAATTGTACTGCTGAACATATACTGTC
         GGGTTAATTGGATCTATGCCACT   TATT CACT GTT GAGATATGTCATTACAAAAACTTGACTTGGAGAAATG CACTCTAACT   TTATA CTCTATCAATGCCATTTTGTCCA      AC CG   ATTGT C   AAATACAT TA    TAGC    TAC AACAGT TTT   CCA    ATCCC       TCAAA A                                                                      
         |||||||||||||||||||||||   |||| |||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||   ||||| |||||||||||||||||||||||      || ||   ||||| |   |||||||| ||    ||||    ||| |||||| |||   |||    |||||       ||||| |                                                                      T
         CCCAATTAACCTAGATACGGTGA   ATAA GTGG CAA CTCTATACGGTAATGTTTTTGAACTGAACCTCTTTAC GTGAGATTGA   AATAT GAGATAGTTACGGTAAGATAGGT      TG GT   TGACA G   TTTATGTA AT    GTCG    ATG TTGTCA AAA   GGT    TGGGG       TTGCA G                                                                      
AATTAACAA                       CAT    A    C   C                                     A          --C     A                       GAATTC  -  TAT     A TAT        C  -AAA    -CAC   -      T   --T   ATTA     ATAAATG     A TTGTCATGCAAGCTCAGAAGATCCACAGTATTTTCAAGTTTTTTAAGATACGGACACAGATATGCATAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End