Plant MITE

SE2530209

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1439
Brachypodium distachyon
SE2530209
hAT
Hat18
Bd3:46188704-46188906
CACACGTC
ACGTCCAGTGGCGGACCCAG

Secondary structure and sequence

TSD TIR

5'

3'

CAC    - -   T           -----ATT     TATTG    GAGCAAACACTACATTTTTAATATTGGGTGGGGCAAATACACAACAGTTCTATTTTTTCTA
   ACGT C CAG GGCGGACCCAG        TTGAA     GGTG                                                             
   |||| | ||| |||||||||||        |||||     ||||                                                             A
   TGCA G GTC CCGCCTGGGTC        AGCCC     ACCC                                                             
  C    C C   C           AACCCAAA     -----    CGTGCGGGGTGGGTTATTCAAAACTTTAGGAAGAAAATGGTTATCTTTAATAGTCCTTTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2530209

CACACGTCCAGTGGCGGACCCAGATTTTGAATATTGGGTGGAGCAAACACTACATTTTTAATATTGGGTGGGGCAAATACACAACAGTTCTATTTTTTCTAATTTTTCCTGATAATTTCTATTGGTAAAAGAAGGATTTCAAAACTTATTGGGTGGGGCGTGCCCCACCCGAAAACCCAACTGGGTCCGCCCCTGCGCACGTC

Copy Cancel