Plant MITE

SE2510211

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1441
Brachypodium distachyon
SE2510211
Tc1/Mariner
St14
Bd3:21977229-21977473
TA
TACTCCCTCCATTCCTTAAAGATTGGCATATTAGCTTTCATTAAGACAAGGCTTTGACCACAAATTACTATGTTAAAGTGTAGTTTATATGACATGAAA

Secondary structure and sequence

TSD TIR

5'

3'

          A      A                                G                         A    A                 CCACA     CA  AAG  CT    AT
TACTCCCTCC TTCCTT AAGATTGGCATATTAGCTTTCATTAAGACAAG CTTTGACCACAAATTACTATGTTAA GTGT GTTTATATGACATGAAA     AGTAT  TG   TA  TTCG  
|||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||     |||||  ||   ||  ||||   
ATGAGGGAGG AAGGAA TTCTAACCGTATAATCGAAGGTAATTCTGTTC GAAACTGGTGTTTAATGATACAGTT CACA CAAATATACTGTACTTT     TCATA  AC   AT  AAGC  
          C      A                                G                         C    C                 ---AA     --  --G  CT    AA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510211

TACTCCCTCCATTCCTTAAAGATTGGCATATTAGCTTTCATTAAGACAAGGCTTTGACCACAAATTACTATGTTAAAGTGTAGTTTATATGACATGAAACCACAAGTATCATGAAGTACTTTCGATAACGAATCTAGCAATACTAATTTCATGTCATATAAACCACACCTTGACATAGTAATTTGTGGTCAAAGGCTTGTCTTAATGGAAGCTAATATGCCAATCTTAAAGGAACGGAGGGAGTA

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