SE2550214

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1444
  • Brachypodium distachyon
  • SE2550214
  • PIF/harbinger
  • To3
  • Bd4:2941596-2941820
  • AAT
  • TGGGCCAGTTCTTTTCGGCTTCCTGGACCGGCTTCTCTGAGAAGCAGCCCTCACCTAGCTTCTTGGAGAAGCCCCCACCTAAATTTGATTAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
AA    CCA               CT              G      A                           - -C   CT       A     CTAC    T    CTGA
  TGGG   GTTCTTTTCGGCTTC  GGACCGGCTTCTCT AGAAGC GCCCTCACCTAGCTTCTTGGAGAAGCC C  CAC  AAATTTG TTAGG    CAAA TAGT    
  ||||   |||||||||||||||  |||||||||||||| |||||| ||||||||||||||||||||||||||| |  |||  ||||||| |||||    |||| ||||    A
  ACCC   CAAGAAAAGCCGAAG  TCTGGCCGAAGAGG TCTTCG CGGGAGTGGATCGAAGGACCTCTTCGG G  GTG  TTTAAAT GATCT    GTTT ATCA    
TA    ACG               AT              A      A                           C TA   --       C     AAAA    C    AATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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