Plant MITE

SE2510216

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1446
Brachypodium distachyon
SE2510216
Tc1/Mariner
St11
Bd3:27797173-27797383
TA
TACTCCCTCCGTTCCAAAACACAACTCATATAGATTTGTGCATTTGGACCAAGGCAGCTCTCATTTCTAGTGCCTAACCACTCATATTGGATTA

Secondary structure and sequence

TSD TIR

5'

3'

                                     -GTG      GA   --AG       --TCA     -A      -A   ------------         G A   AT
TACTCCCTCCGTTCCAAAACACAACTCATATAGATTT    CATTTG  CCA    GCAGCTC     TTTCT  GTGCCT  ACC            ACTCATATT G TTA  
|||||||||||||||||||||||||||||||||||||    ||||||  |||    |||||||     |||||  ||||||  |||            ||||||||| | |||   
ATGAGGGAGGTAAGGTTTTGTGTTGAGTATATCTAAA    GTAAAC  GGT    TGTTGAG     AGAGA  CATGGG  TGG            TGAGTATAG T AAT  
                                     AAGA      AA   GTTG       TAAAA     AC      CG   GCCGGTTATTGA         G A   GA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510216

TACTCCCTCCGTTCCAAAACACAACTCATATAGATTTGTGCATTTGGACCAAGGCAGCTCTCATTTCTAGTGCCTAACCACTCATATTGGATTAATAGTAAATGGATATGAGTAGTTATTGGCCGGGTGCGGGTACCAAGAGAAAAATGAGTTGTGTTGTGGAACAAATGAGAAAAATCTATATGAGTTGTGTTTTGGAATGGAGGGAGTA

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