SE2510217

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1447
  • Brachypodium distachyon
  • SE2510217
  • Tc1/Mariner
  • St6
  • Bd4:33904659-33904899
  • TA
  • TACTCCCTCCGTTCCATAATATAAGGCGCCCACGCATTTCGAGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
                  A          C               CCAAC                                                       AC   ATTCATATCTG
TACTCCCTCCGTTCCATA TATAAGGCGC CACGCATTTCGAGGT     TTTGACCATCAATTAGACTAACAAAATGTGAATTATGTGTTATAAAAATTATACC  TAG           
|||||||||||||||||| |||||||||| |||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||           A
ATGAGGGAGGCAAGGTAT ATATTCCGTG GTGCGTAAAGTTCTA     AAACTGGTGGTTAATCTGGTTGTTTTACACTTAATACATAATATTTTTAATATGG  CAG           
                  A          T               AAACA                                                       --   CCTTTGAAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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