SE2550218

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1448
  • Brachypodium distachyon
  • SE2550218
  • PIF/harbinger
  • To3
  • Bd3:59201765-59201989
  • AAT
  • TGGGTGCGTTCTTTTCGGCTTCTAGGACCGGCTTCTCCTAGAAGCTGCACTCACCTAGCTTCCTGGAGAAGCCACATCTCAGATTTAGCTAGGTTTTCAAAGTAGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
AA     GC                A             CT         A                        -A     C      AGC      T     G      AG
  TGGGT  GTTCTTTTCGGCTTCT GGACCGGCTTCTC  AGAAGCTGC CTCACCTAGCTTCCTGGAGAAGCC  CATCT AGATTT   TAGGTT TCAAA TAGTTT  
  |||||  |||||||||||||||| |||||||||||||  ||||||||| ||||||||||||||||||||||||  ||||| ||||||   |||||| ||||| ||||||  A
  ACCCG  CAAGAAAAGCCGAAGG CCTGGCCGAAGAG  TCTTCGACG GAGTGGGTCGAAGGACCTCTTCGG  GTGGA TTTAAA   ATCCGA AGTTT ATCAAA  
TA     GT                A             AC         A                        CG     -      CTA      T     G      CC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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