SE2550220

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1450
  • Brachypodium distachyon
  • SE2550220
  • PIF/harbinger
  • To20
  • Bd3:9315079-9315420
  • TTA
  • AGGGCGTGTACAATGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                --   A   TCAGTCTTTTCTTATCGATGCCACATAGGATAAAATCTGACGTGGAAGGCAGAGAAATGAAGAAAAGGCACAAGACTTCTCTTAATTAAGAGATGATCTCTTCACAAAAATGATAAGGCAAAGATAAAGCAAATTTCTCATTGTA
  AGGGCGTGTACAATGG  GGT ACG                                                                                                                                                 
  ||||||||||||||||  ||| |||                                                                                                                                                 T
  TCCTGTACATGTTACC  CTA TTC                                                                                                                                                 
AT                AA   -   TAATGGAATAGAATCCACAAAGTGCAGTAAATCTTTTACGTTGTTTTGTACAACATGTTACCCAATAGAGAACTACAATATAGAATCTTAATTACTAATCTACTTATTTTAATTGATTTATTTACAATTCTTTTCTGTTTTAGGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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