Plant MITE

SE2530221

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1451
Brachypodium distachyon
SE2530221
hAT
Hat19
Bd1:65900093-65900654
CATATATA
ATATATATCAGGATGGCAATGG

Secondary structure and sequence

TSD TIR

5'

3'

C      A               ---  CG   -----    A    C   CAAATCTATATCCATCGCCAAATCAACTATCCATCCATGAAAGTATCCGTGGATGCAAAACCATATCCGCATCCATATCTACTGGGTATCCGGGTATCCATTGATTATCCATGCAATATACATCATAAACAGGAGCAACAACAACATATCAGGAAGAGAGAGGGGATCGATGGGGGAATCAGGAGTCGAGGACAGATCAAGGTCGGCGGCTCGTGGGGTGGGAGTGTGGGACTTAG
 ATATAT TCAGGATGGCAATGG   GG  GGT     TTGG CGGT GAT                                                                                                                                                                                                                                            
 |||||| |||||||||||||||   ||  |||     |||| |||| |||                                                                                                                                                                                                                                             
 TATATA AGTTCTACCGTTACC   CA  GTT     CCTA TAGG TAC                                                                                                                                                                                                                                            
A      C               TAT  --   TTACA    -    -   TTATAGGTTGAGTACCTAGCGCCTATACCTTGCCTAAAAGCTAGGTACCTATAAGTACTTACCTATGGACGGTTGAGCACCTCGCCCGTGCCTATAGTGTAAACTAGGTACCTATAGGTACCTATGGGCCATAAATAATTTTATTTATTTAATAACTGTACACCCAGGTAATCAATCGATCTAACTCAGTACATTTGTCAGAGGAAGGGTTAGTTGGGATGGGATTGTTGAAGAGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2530221

CATATATATCAGGATGGCAATGGGGCGGGTTTGGACGGTCGATCAAATCTATATCCATCGCCAAATCAACTATCCATCCATGAAAGTATCCGTGGATGCAAAACCATATCCGCATCCATATCTACTGGGTATCCGGGTATCCATTGATTATCCATGCAATATACATCATAAACAGGAGCAACAACAACATATCAGGAAGAGAGAGGGGATCGATGGGGGAATCAGGAGTCGAGGACAGATCAAGGTCGGCGGCTCGTGGGGTGGGAGTGTGGGACTTAGAGAGAAGTTGTTAGGGTAGGGTTGATTGGGAAGGAGACTGTTTACATGACTCAATCTAGCTAACTAATGGACCCACATGTCAATAATTTATTTATTTTAATAAATACCGGGTATCCATGGATATCCATGGATCAAATGTGATATCCGTGCCCGCTCCACGAGTTGGCAGGTATCCATTCATGAATATCCATGGATCGAAAATCCGTTCCATATCCGCGATCCATGAGTTGGATATTCATGGATATCCACATTTTGACTATCCATTGCCATCTTGACATATATA

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