SE2520225

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1455
  • Brachypodium distachyon
  • SE2520225
  • Mutator
  • M6
  • Bd2:44668837-44669365
  • TTAATAAAA
  • AAGAGTAAAATACACCACTAGTCCATGAACTCGGCAAAAATGAACACTTTAGTCCACGAACTCAAAAAACGCACACTTAAACCCCTAAACTAGAACTGTTGTGTCACTTTACTCCAAAAACGGTTCGGCGAGGCTTAAACAC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAATAA                                                               A                           A AA                C                                CACGTCGGCTTCGGCTACCCCTTCACCGGCGTCCTCTCGTCAAAATTGAGCACCGTGGACTTGATAGCAACCAACGACGTGGTTCTCAGGGCCCCATGATCCATGTCGGGGCG
       AAGAGTAAAATACACCACTAGTCCATGAACTCGGCAAAAATGAACACTTTAGTCCACGAACTC AAAAACGCACACTTAAACCCCTAAACT G  CTGTTGTGTCACTTTA TCCAAAAACGGTTCGGCGAGGCTTAAACACGC                                                                                                                 
       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |  |||||||||||||||| ||||||||||||||||||||||||||||||||                                                                                                                 T
       TTCTCATTTTATGTGGTGATCAGGTACTTGAGCCGTTTTTACTTGTGAAATCAGGTGCTTGAG TTTTTGCGTGTGAATTTGGGGATTTGA C  GATGACACAGTGAAAT AGGTTTTTGTCAAGCCGCTCCGAATTTGTGCG                                                                                                                 
AAAATAA                                                               C                           C CC                C                                AAACACCGACGGTGCAGCCAAAGCCGGTCCTGGCGTCCGACGATGACCTAAAAGAATCCTCAAAAAAAACGTTTTAGTGGTACGGGCTCGGCGGGCGCTCCCCGTTCCGCCGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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