Plant MITE

SE2520226

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1456
Brachypodium distachyon
SE2520226
Mutator
M5
Bd2:45951281-45951500
ATAAACTAA
GGTGTAGCTATTTCTAAGTCACCTGATTTTCAAG

Secondary structure and sequence

TSD TIR

5'

3'

ATAAACTAAG   GTA      TCT     A C  A    CA  AAAT   CCATAAAT           TTTC  -    G     TTAAGATCTAAGGGTCATCTACATTCTCT
          GGT   GCTATT   AAGTC C TG TTTT  AG    GAG        ATCAATCGATG    AG AACC TTGGA                             
          |||   ||||||   ||||| | || ||||  ||    |||        |||||||||||    || |||| |||||                             T
          CCA   CGATAA   TTCAG G AC AAAA  TC    CTT        TAGTTAGCTAT    AT GTAG CCTAA                             
AATCAAATAG   AAG      CTC     C A  -    AA  -AAT   --------           -GCA  C    -     AAAATTAGGTTGCTATCGTTCACTCTCTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2520226

ATAAACTAAGGGTGTAGCTATTTCTAAGTCACCTGATTTTCAAGAAATGAGCCATAAATATCAATCGATGTTTCAGAACCGTTGGATTAAGATCTAAGGGTCATCTACATTCTCTTGTCTCTCACTTGCTATCGTTGGATTAAAAAATCCGATGCTAACGTATCGATTGATTTCTAACTAAAAAACAAGCGACTTCTCAATAGCGAAACCGATAAACTAA

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