SE2550227

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1457
  • Brachypodium distachyon
  • SE2550227
  • PIF/harbinger
  • To3
  • Bd1:53443057-53443281
  • TAG
  • TAGGGGCCAGTTCTTTTCGGCTTCCTGGACCGGCTTCTCCGAGAAGCTGCCTTCCTCCAGCTTCTTGGAGAAGCCGCCACCTAAATTTGATTAGGCTACCAAACTAGTTTGGCCTAAACTACTTTGGAAGTCTAGCTAAATTTGTGATGCGGCTTCTCCAGCAAGTTAGGTGAGGGCAGCTTCTAGGAGAAGCCGGTCCTAGAATCCGAAAAGAACGCACCCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
      -  CA           C   CT              G             CT  -     C             CA C        A       A     C       G
 TAGGG GC  GTTCTTTTCGG TTC  GGACCGGCTTCTCC AGAAGCTGCCTTC  CC AGCTT TTGGAGAAGCCGC  C TAAATTTG TTAGGCT CCAAA TAGTTTG 
 ||||| ||  ||||||||||| |||  |||||||||||||| |||||||||||||  || ||||| |||||||||||||  | |||||||| ||||||| ||||| ||||||| C
 ATCCC CG  CAAGAAAAGCC AAG  CCTGGCCGAAGAGG TCTTCGACGGGAG  GG TTGAA GACCTCTTCGGCG  G GTTTAAAT GATCTGA GGTTT ATCAAAT 
G     A  --           T   AT              A             -T  A     C             TA T        C       A     C       C
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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