Plant MITE

SE2530232

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1462
Brachypodium distachyon
SE2530232
hAT
Hat20
Bd5:18967304-18967481
AGTATAAT
TATAATTAGGGGTGCAACTTGGTGACCCTCAGGGTACCCTTTGACCCTCCTTAGTTCAAACAAATGAACTAGTTTTTCAAAAAG

Secondary structure and sequence

TSD TIR

5'

3'

AG    A      G     C  G                  T                   ACA        --      TC    A TTG
  TATA TTAGGG TGCAA TT GTGACCCTCAGGGTACCC TTGACCCTCCTTAGTTCAA   AATGAACT  AGTTTT  AAAA G   
  |||| |||||| ||||| || |||||||||||||||||| |||||||||||||||||||   ||||||||  ||||||  |||| |    
  ATAT AATCTC ACGTT AA CACTGGGAGTCCCATGGG AACTGGGAGGAATCAAGTT   TTACTTGA  TCAAAA  TTTT C   
TA    G      G     C  A                  T                   GTG        TT      --    A TGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2530232

AGTATAATTAGGGGTGCAACTTGGTGACCCTCAGGGTACCCTTTGACCCTCCTTAGTTCAAACAAATGAACTAGTTTTTCAAAAAGTTGTGTCATTTTAAAACTTTAGTTCATTGTGTTGAACTAAGGAGGGTCAATGGGTACCCTGAGGGTCACAAACTTGCAGCTCTAAGTATAAT

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