Plant MITE

SE2510234

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1464
Brachypodium distachyon
SE2510234
Tc1/Mariner
St5
Bd3:47665806-47666051
TA
TACTCTCTCCTTTTCACAAAGGTTGGCATATTTGGTTTCATTAAGACAAGGCTTTGACAAATGA

Secondary structure and sequence

TSD TIR

5'

3'

                           A          CA                  A     TAACTTTATTA     -T   TTATATAATACGAAACCACAATTATTAGTAAAAACTTGTGAA
TACTCTCTCCTTTTCACAAAGGTTGGC TATTTGGTTT  TTAAGACAAGGCTTTGAC AATGA           ATATG  AAT                                          
||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||| |||||           |||||  |||                                           
ATGAGGGAGGAAAAGTGTTTCCAACCG ATAAACCAAA  AATTCTGTTTCGAAACTG TTACT           CTTTT  TTG                                          
                           C          AA                  G     -------TAAT     AC   TACACAAAAAAGTATGTACTTTAAATATAGTTATCTAAGTAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510234

TACTCTCTCCTTTTCACAAAGGTTGGCATATTTGGTTTCATTAAGACAAGGCTTTGACAAATGATAACTTTATTAATATGTAATTTATATAATACGAAACCACAATTATTAGTAAAAACTTGTGAAGATGAATCTATTGATATAAATTTCATGTATGAAAAAACACATGTTCATTTTCTAATTCATTGGTCAAAGCTTTGTCTTAAAAAAACCAAATACGCCAACCTTTGTGAAAAGGAGGGAGTA

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