SE2530235

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1465
  • Brachypodium distachyon
  • SE2530235
  • hAT
  • Hat9
  • Bd1:5232181-5232461
  • CTCCTGTC
  • TATACCTGGGCATGGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
CTCCTGTC            -----                --   CCCGACGTCCTGGGCCGGGCTTCACTTTCCAGTCCCAAGCCCGGCCCGAAAAAAGCTCGAAATGACAAAAAACCGTGTTTTTTTGGGGAAAATAGATA
        TATACCTGGGCA     TGGGTGGCCCGGCCCG  AAG                                                                                                  
        ||||||||||||     ||||||||||||||||  |||                                                                                                   
        ATATGGACCCGT     GCTCGGCCCGAGTTTT  GGG                                                                                                  
CTGTCCTC            TTAGG                TC   CTACCCTTTTGGAGTTCGGGCTCGGGCCGGGCTTCTGGCTGTTTTACCGGTAAAATCATAATTTTATTAACAAAAACTTTATTTATTTACTAAAAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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